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India’s Genomic Sequencing Initiative for Tuberculosis

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Context:

The Department of Biotechnology (DBT) has completed the genomic sequencing of a third, or 10,000 samples, of the target of 32,500 samples of mycobacterium tuberculosis the bacteria behind tuberculosis (TB) in a bid to improve the understanding of drug-resistant TB and capture unique genomic features of the TB bacterium in India. Of the sequenced samples, 7% are said to be resistant to a single drug.

Overview of the Initiative

  • Launched by: Department of Biotechnology (DBT), Ministry of Science and Technology.
  • Programme: Part of Data-Driven Research to Eradicate TB (Dare2eraD TB).
  • Goal: Genomic sequencing of 32,500 Mycobacterium tuberculosis samples.
  • Progress:
    • 10,000 samples sequenced (one-third of target).
    • Completion target: October 2025.
  • Consortium Members:
    • DBT, Council of Scientific and Industrial Research (CSIR), Indian Council of Medical Research (ICMR).
    • Collective body: Indian Tuberculosis Genomic Surveillance Consortium.
  • Genomic sequencing is a laboratory method used to determine the complete DNA sequence of an organism or cell type, providing insights into genetic makeup, disease, and evolutionary relationships. 

Findings From Sequenced Samples

  • Drug Resistance:
    • 7% of sequenced TB strains showed resistance to a single drug.
  • Demographic Insights:
    • Majority of TB patients are between 18-45 years of age.
    • Many patients are diabetic and underweight, indicating comorbidities.

National TB Eradication Goals

  • India’s target: Eradicate TB by 2025, five years ahead of WHO’s 2030 target.
  • Current TB prevalence (as of 2022):
    • 1,990 cases per million, down from 2,370 per million in 2015.
    • WHO’s elimination benchmark: 1 case per million.
  • India’s share: Contributes to 28% of global new TB cases.

Challenges Highlighted

  • Drug-Resistant TB:
    • Major concern for treatment and public health.
  • Latent TB Pool:
    • Potentially up to 3,000 per million carry latent TB infections, facilitating undetected spread.
  • Time-Consuming Testing:
    • Current diagnostic confirmation can take up to three weeks.

Future Strategies

  • Use of Artificial Intelligence (AI):
    • Potential to reduce TB testing duration from three weeks to one week.
  • Genomic insights:
    • Aim to develop faster, more precise diagnostics and understand regional and genetic variations in TB strains.

Significance

  • Global Impact: Progress in India is pivotal for global TB elimination efforts.
  • Public Health Policy: Data will help shape drug development, targeted interventions, and national TB control strategies.

Source: TH

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